downstream lme4 package test report

lme4 version: 0.999902344.0

Test date: Wed May 16 15:02:30 2012

Notes

  pkgname location version maintainer result diag
1 agridat CRAN 1.4 Kevin Wright error_examples 67: > summary(m1)@REmat
68: Error: trying to get slot "REmat" from an object (class "summary.mer") that is not an S4 object
69: Execution halted
2 AICcmodavg CRAN 1.24 Marc J. Mazerolle error_examples 179: Error in aictab(cand.set = Cands, modnames = Model.names, sort = TRUE) :
180: Function not yet defined for this object class
181: Execution halted
3 amer CRAN 0.6.10 Fabian Scheipl error_install ** preparing package for lazy loading
Error in reconcilePropertiesAndPrototype(name, slots, prototype, superClasses, :
No definition was found for superclass "mer" in the specification of class "amer"
Error : unable to load R code in package 'amer'
ERROR: lazy loading failed for package 'amer'
* removing '/mnt/hgfs/bolker/Documents/R/pkgs/lme4/pkgtests/amer.Rcheck/amer'
4 aod CRAN 1.3 Renaud Lancelot error_examples 62: Error in nrow(GQmat) : could not find function "GHrule"
63: Calls: iccbin ... do.call -> -> fn1 -> fn -> pwrssUpdate -> nrow
64: Execution halted
5 arm CRAN 1.5-04 Yu-Sung Su error_examples 122: unable to find an inherited method for function "display", for signature "lmerMod"
123: Calls: display ->
124: Execution halted
6 benchmark Rforge 0.3-4 Manuel J. A. Eugster OK
7 blme CRAN 0.01-4 Vincent Dorie error_install ** R
** inst
** preparing package for lazy loading
Error : class "mer" is not exported by 'namespace:lme4'
ERROR: lazy loading failed for package 'blme'
* removing '/mnt/hgfs/bolker/Documents/R/pkgs/lme4/pkgtests/blme.Rcheck/blme'
8 boss CRAN 1.0 Arend Voorman error_examples 70: Error in boss.set(y ~ x1 + x2 + factor(site) + (1 | id), id = data$id, :
71: no slot of name "X" for this object of class "lmerMod"
72: Execution halted
9 BradleyTerry2 CRAN 1.0-0 Heather Turner error_examples 67: Error in match.arg(type) : 'arg' should be one of "link", "response"
68: Calls: predict -> predict.glmmPQL -> match.arg
69: Execution halted
10 car Rforge 2.0-13 John Fox OK
11 catdata CRAN 1.0 Gunther Schauberger OK
12 clusterPower CRAN 0.3 Nicholas G. Reich OK
13 cplm CRAN 0.5-1 Wayne Zhang error_depfail 10: Package required but not available: 'amer'
14 DAAG CRAN 1.12 W. John Braun OK
15 difR CRAN 4.2 David Magis OK
16 doBy CRAN 4.5.2 Søren Højsgaard OK
17 effects Rforge 2.1-2 John Fox OK
18 EquiNorm CRAN 2.0 Li-Xuan Qin OK
19 ez CRAN 3.0-1 Michael A. Lawrence error_examples 114: cannot coerce type 'closure' to vector of type 'character'
115: Calls: ezBoot ... formula -> formula.default -> eval -> eval -> eval -> parse
116: Execution halted
20 flexmix CRAN 2.3-8 Bettina Gruen OK
21 gamm4 CRAN 0.1-5 Simon Wood error_examples 76: Error in b$FL : $ operator not defined for this S4 class
77: Calls: gamm4
78: Execution halted
22 glmulti CRAN 1.0.4 Vincent Calcagno OK
23 gmodels CRAN 2.15.2 Gregory R. Warnes OK
24 GRRGI CRAN 1.1 Walter Resch error_examples 81: unable to find an inherited method for function "sigma.hat", for signature "lmerMod"
82: Calls: MLGI -> sigma.hat ->
83: Execution halted
25 HLMdiag CRAN 0.1.5 Adam Loy error_examples 71: Error in case_delete(model = fm, group = TRUE, type = "both") :
72: no slot of name "fixef" for this object of class "lmerMod"
73: Execution halted
26 influence.ME CRAN 0.8.1 Rense Nieuwenhuis error_examples 63: incorrect number of dimensions
64: Calls: estex -> grouping.levels
65: Execution halted
27 kulife CRAN 0.1-9 Claus Ekstrom OK
28 languageR CRAN 1.4 <harald.baayen@uni-tuebingen.de> OK
29 LMERConvenienceFunctions CRAN 1.6.8.2 Antoine Tremblay; IWK Health Center error_examples 87: 'arg' should be one of "deviance", "pearson", "working", "response", "partial"
88: Calls: mcp.fnc ... residuals -> residuals.lmResp -> match.arg -> match.arg
89: Execution halted
30 longpower CRAN 1.0-1 Michael C. Donohue OK
31 MEMSS Rforge 0.9-0 <lme4-authors@R-forge.wu-wien.ac.at> OK
32 MethComp Rforge 1.15 Bendix Carstensen OK
33 mice CRAN 2.12 Stef van Buuren OK
34 mixAK CRAN 2.2 Arnošt Komárek OK
35 MixMod CRAN 1.0 Alexandra Kuznetsova error_examples 64: no slot of name "ST" for this object of class "lmerMod"
65: Calls: totalAnalysis -> totalAnovaRandLsmeans -> checkCorr
66: Execution halted
36 mlmRev local 1.0-3 <lme4-authors@R-forge.wu-wien.ac.at> OK
37 multcomp Rforge 1.2-12 Torsten Hothorn OK
38 MuMIn CRAN 1.7.7 Kamil Bartoń OK
39 NanoStringNorm CRAN 1.1.6 Daryl Waggott OK
40 NetworkAnalysis CRAN 0.3-1 Cedric E Ginestet OK
41 odprism CRAN 1.1 Martijn van de Pol error_examples 168: caught warning: Cholmod warning 'not positive definite' at file:../Cholesky/t_cholmod_rowfac.c, line 432
169: caught warning: Cholmod warning 'not positive definite' at file:../Cholesky/t_cholmod_rowfac.c, line 432
170: Execution halted
42 ordinal Rforge 2012.05-09 Rune Haubo B Christensen OK
43 pamm CRAN 0.7 Julien Martin OK
44 pbkrtest CRAN 0.3-1 Søren Højsgaard error_examples 100: no applicable method for 'KRmodcomp' applied to an object of class "c('lmerMod', 'merMod')"
101: Calls: KRmodcomp
102: Execution halted
45 pedigreemm CRAN 0.2-4 Ana Ines Vazquez error_install ** preparing package for lazy loading
Error in reconcilePropertiesAndPrototype(name, slots, prototype, superClasses, :
No definition was found for superclass "mer" in the specification of class "pedigreemm"
Error : unable to load R code in package 'pedigreemm'
ERROR: lazy loading failed for package 'pedigreemm'
* removing '/mnt/hgfs/bolker/Documents/R/pkgs/lme4/pkgtests/pedigreemm.Rcheck/pedigreemm'
46 phmm CRAN 0.7-4 Michael Donohue error_examples 134: "ddenseMatrix#dgeMatrix" would also be valid
135: Error: trying to get slot "AICtab" from an object (class "summary.mer") that is not an S4 object
136: Execution halted
47 polytomous CRAN 0.1.4 Antti Arppe skipped
48 prLogistic CRAN 1.1 Raydonal Ospina error_examples 94: PIRLS step failed
95: Calls: prLogisticDelta ... stopifnot -> fn -> pwrssUpdate -> .Call -> cpp_exception
96: Execution halted
49 R2admb Rforge 0.7.5.2 Ben Bolker OK
50 R2STATS CRAN 0.68-27 Yvonnick Noel error_install ** R
** inst
** preparing package for lazy loading
Error : object 'logLik' is not exported by 'namespace:lme4'
ERROR: lazy loading failed for package 'R2STATS'
* removing '/mnt/hgfs/bolker/Documents/R/pkgs/lme4/pkgtests/R2STATS.Rcheck/R2STATS'
51 RLRsim CRAN 2.0-11 Fabian Scheipl error_examples 79: > X <- m@X
80: Error: no slot of name "X" for this object of class "lmerMod"
81: Execution halted
52 SASmixed Rforge 1.0-1 <lme4-authors@R-forge.wu-wien.ac.at> OK
53 sdtalt CRAN 1.03 Dan Wright OK
54 TripleR CRAN 1.1.6 Felix Schönbrodt OK
55 Zelig CRAN 3.5.5 Kosuke Imai error_vignette 118: Error: "nlmodel" is not a slot in class "glmerMod"
119: Execution halted
120:


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