Linear mixed-effects models using Eigen and S4


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Documentation for package ‘lme4Eigen’ version 0.9996875-8

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anova-method Class "merMod" of Fitted Mixed-Effect Models
bootMer Model-based (Semi-)Parametric Bootstrap for Mixed Models
cake Breakage angle of chocolate cakes
cbpp Contagious bovine pleuropneumonia
coef-method Class "merMod" of Fitted Mixed-Effect Models
devcomp Extract the deviance component list
deviance-method Class "merMod" of Fitted Mixed-Effect Models
Dyestuff Yield of dyestuff by batch
Dyestuff2 Yield of dyestuff by batch
findbars Determine random-effects expressions from a formula
fitted-method Class "merMod" of Fitted Mixed-Effect Models
fixed.effects Extract fixed-effects estimates
fixef Extract fixed-effects estimates
fixef.merMod Extract fixed-effects estimates
formula-method Class "merMod" of Fitted Mixed-Effect Models
getL Extract or Get Generalize Components from a Fitted Mixed Effects Model
getL-method Extract or Get Generalize Components from a Fitted Mixed Effects Model
getME Extract or Get Generalize Components from a Fitted Mixed Effects Model
GHrule Univariate Gauss-Hermite quadrature rule
glmer Fit Generalized Linear Mixed-Effects Models
glmerMod-class Class "merMod" of Fitted Mixed-Effect Models
glmFamily Generator object for the 'glmFamily' class
glmFamily-class Class '"glmFamily"' - a reference class for 'family'
glmResp Generator objects for the response classes
glmResp-class Classes '"lmResp"', '"glmResp"', '"nlsResp"' and '"lmerResp"'
golden Generator object for the golden search optimizer class.
golden-class Class '"golden"'
GQdk Sparse Gaussian Quadrature grid
GQN Sparse Gauss-Hermite quadrature grids
InstEval University Lecture/Instructor Evaluations by Students at ETH
isNested Is f1 nested within f2?
isREML Check for a REML fit
lmer Fit Linear Mixed-Effects Models
lmerMod-class Class "merMod" of Fitted Mixed-Effect Models
lmerResp Generator objects for the response classes
lmerResp-class Classes '"lmResp"', '"glmResp"', '"nlsResp"' and '"lmerResp"'
lmList List of lm Objects with a Common Model
lmList-class Class "lmList" of 'lm' Objects on Common Model
lmResp Generator objects for the response classes
lmResp-class Classes '"lmResp"', '"glmResp"', '"nlsResp"' and '"lmerResp"'
logLik-method Class "merMod" of Fitted Mixed-Effect Models
merMod-class Class "merMod" of Fitted Mixed-Effect Models
merPredD Generator object for the 'merPredD' class
merPredD-class Class '"merPredD"' - a dense predictor reference class
mkdevfun Create a deviance evaluation function from a predictor and a response module
mkRespMod Create an lmerResp, glmResp or nlsResp instance
mkReTrms Create Z, Lambda, Lind, etc.
model.frame-method Class "merMod" of Fitted Mixed-Effect Models
model.matrix-method Class "merMod" of Fitted Mixed-Effect Models
NelderMead Generator object for the Nelder-Mead optimizer class.
NelderMead-class Class '"NelderMead"'
Nelder_Mead Nelder-Mead optimization
nlformula Manipulate a nonlinear model formula.
nlmer Fit Nonlinear Mixed-Effects Models
nlmerMod-class Class "merMod" of Fitted Mixed-Effect Models
nlsResp Generator objects for the response classes
nlsResp-class Classes '"lmResp"', '"glmResp"', '"nlsResp"' and '"lmerResp"'
nobars Omit terms separated by vertical bars in a formula
Pastes Paste strength by batch and cask
Penicillin Variation in penicillin testing
print-method Class "merMod" of Fitted Mixed-Effect Models
profile-methods Methods for profile() of [ng]lmer fitted models
profile.merMod Methods for profile() of [ng]lmer fitted models
ranef Extract the modes of the random effects
ranef.merMod Extract the modes of the random effects
refit Refit a model by maximum likelihood criterion
refitML Refit a model by maximum likelihood criterion
rePos Generator object for the rePos (random-effects positions) class
rePos-class Class '"rePos"'
show-method Class "lmList" of 'lm' Objects on Common Model
show-method Class "merMod" of Fitted Mixed-Effect Models
sigma Extract residual standard error
simulate-method Class "merMod" of Fitted Mixed-Effect Models
sleepstudy Reaction times in a sleep deprivation study
subbars "Sub[stitute] Bars"
summary-method Class "merMod" of Fitted Mixed-Effect Models
terms-method Class "merMod" of Fitted Mixed-Effect Models
update-method Class "merMod" of Fitted Mixed-Effect Models
VarCorr Extract variance and correlation components
VarCorr-method Class "merMod" of Fitted Mixed-Effect Models
VarCorr.merMod Extract variance and correlation components
varianceProf Transform to the variance scale
vcov-method Class "merMod" of Fitted Mixed-Effect Models
VerbAgg Verbal Aggression item responses