\documentclass[graybox,envcountchap,footinfo,natbib]{svmono}
\usepackage{mathptmx,helvet,courier}
\usepackage{type1cm}

\usepackage{makeidx}         % allows index generation
\usepackage{graphicx}        % standard LaTeX graphics tool
                             % when including figure files
\usepackage{multicol}        % used for the two-column index
\usepackage[bottom]{footmisc}% places footnotes at page bottom
%\usepackage{float}
% see the list of further useful packages
% in the Reference Guide
\usepackage{amsmath,amsfonts,bm,url,Sweave,paralist}
% For hyperlinks in PDF [but *not* for final / Springer]:
\usepackage{hyper-lMMwR}
% use "ugly boxes" around hyperlinks -- these do *NOT* print, nor show in lrgprt.pdf !!
\hypersetup{colorlinks={false}}

\bibliographystyle{plainnat}
\input{DMBmacros}
\makeindex             % used for the subject index
                       % please use the style svind.ist with
                       % your makeindex program

%% Do comment in and out different parts only here (not below):
%% {keeps *.aux files, TOC, etc in a more consistent state}
\includeonly{
dedication%
%,foreword
,preface%
%,acknow,
,acronym%           using models fm<n> :
%           Chapt.,           <n>
,ChIntro%        1  -- models 01 02
,ChMultiple%     2  -- models 03 04 05
,ChLongitudinal% 3  -- model  16 (was "06") 17(was "07")
,ChCovariates%   4  -- models 06 07 09 7
,ChTheory%       5  -- model  08
,ChGLMMBinomial% 6  -- model  10 11 12 13
}
\DeclareMathOperator{\logit}{logit}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\begin{document}
\author{Douglas M. Bates}
\title{lme4: Mixed-effects modeling with R}
%\subtitle{-- Monograph --}
\maketitle

\frontmatter%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\include{dedication}
%\include{foreword}
\include{preface}
%\include{acknow}

\tableofcontents
\listoffigures{}
%\listoftables{}
\include{acronym}

\mainmatter%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\include{ChIntro}
\include{ChMultiple}
\include{ChLongitudinal}
\include{ChCovariates}
\include{ChTheory}
\include{ChGLMMBinomial}

\backmatter%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\bibliography{lMMwR}
%\include{glossary}
%\include{solutions}
\printindex

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\end{document}






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